Experience

 
 
 
 
 

PhD Student

Norwegian University of Science and Technology

Mar 2017 – Feb 2020 Trondheim
  • Development of a guideline for the representation of causal interactions in molecular biology.
  • Data extraction of causal statements from prior-knowledge.
  • Standardisation of the DrugLogics’ pipeline to build logical model from causal statements (The Druglogics project).
  • Co-supervision of Eirini Tsirvouli’s master thesis.
  • Involved in the GREEKC consortium for the construction of a Knowledge Commons for Gene Regulation.
 
 
 
 
 

Scientific staff member

University of Rostock

Sep 2015 – Jan 2017 Rostock
  • Contribution to the development of SBGN-ED visualization software tool and to the libSBGN Java library.
  • Co-supervision of Tom Gebhart’s master thesis “Concepts and tools to improve the visualization of differences between model versions in systems biology”.
  • Co-organization of the SBGN workshop in Newcastle upon Tyne, the 24th of September 2016.
 
 
 
 
 

Bioinformatics intern

European Institute for Systems Biology and Medicine

Aug 2015 – Feb 2017 Lyon
  • Development of STON (SBGN to Neo4j), a Java-based application to store and explore biological networks from SBGN into a Neo4j graph database environment.
  • Development of YTOS (yEd to SBGN), a Java-based application to design systems biology models with the general-purpose yEd Graph Editor.

Skills

Programming

Java, Python, R

Neo4j

Eclipse, IntelliJ

Integrated Development Environment

Network visualisation

Cytoscape, SBGN-ED

LateX

Linux, Mac OS, Windows

Publications

Interests

Traveling

Board games

Photography

Contact

  • Realfagbygget, Høgskoleringen 5, 7491 Trondheim, Norway