Presentations
A list of invited talks, conference presentations, webinars and workshops/tutorials delivered (page in construction).
2025
SPHN Connector: Convert real-world sensitive health data into de-identified and validated knowledge graph
Talk – Medical Informatics Europe (19-21 May), Glasgow - Scotland
2024
SPHN strategy to unravel the semantic drift between versions of standard terminologies
Talk – SWAT4HCLS 2024 (26-29 Feb), Leiden - Netherlands
The SPHN SHACLer: Automatic generation of SHACL rules based on the SPHN RDF Schema
Talk – Knowledge Graph Forum (30 May), Basel - Switzerland
The Swiss Personalized Health Network: Towards FAIR health data with the SPHN Semantic Interoperability Framework
Talk – International Symposium on Integrative Bioinformatics (12-13 Sep), Zurich - Switzerland
SPHN data journey with knowledge graph Ontotext
Invited talk – Ontotext Knowledge Graph Forum (22-23 Oct), online
2023
FAIR data: why and how?
Invited talk – SIBLearn@Lunch (22 May), Lausanne - Switzerland
The SPHN Semantic Interoperability Framework: from clinical routine data to FAIR research data
Talk – BOSC 2023 (24-25 Jul), Lyon - France
Data Provenance in the SPHN Dataset and RDF Schema
Talk – Provenance workshop II (21-22 Aug), Rostock - Germany
2022
FAIRification of health-related data in the Swiss Personalized Health Network
Webinar – MILA Seminar Series (24 Jan), online
2020
Causal molecular interactions: PSI-MITAB2.8 support of MI2CAST
Talk – HUPO PSI Spring 2020 (23-26 Mar), online
Standardization process of causal statements: prior-knowledge for logical modeling
Lecture – Course BI8040: Logical Modeling for Experimental Design in Biotechnology and Biomedicine, Trondheim - Norway
2019
Causal statements in VSM, from use cases to generic templates
Talk – GREEKC Workshop (21-22 Feb), Málaga, Spain
MICAST guideline: Formalize the representation of causal statements and recording of necessary metadata
Talk – Biocuration 2019 - Developing the Gene Regulation Knowledge Commons (7-10 Apr), Cambridge - United Kingdom
Knowledge management and data extraction of causal statements for logical modeling
Talk – Computational Systems Biology of Cancer Single Cell Analysis - 2nd Edition - Institut Curie, Paris - France (23-28 Sep)
Causal statement: Knowledge management and extraction
Talk – Berkeley Bioinformatics Open-source Projects, Berkeley - United States (28 Oct)
Relation Ontology vs Molecular Interactions: Mapping of regulation terms
Talk – GREEKC Workshop (05-06 Nov), Sarajevo - Bosnia and Herzegovina
MI2CAST guidelines: update on current status
Talk – GREEKC Workshop (05-06 Nov), Sarajevo - Bosnia and Herzegovina
2018
MICAST, Minimum Information about a Causal Statement
Talk – COLOSYS (14 Aug), Trondheim - Norway
2017
MOST, exploring differences between versions of models in BioModels and in the Physiome Model Repository
Invited talk – EBI-Babraham Institute Visit (12 Jan), Cambridge - United Kingdom
Representation of causality statements
Talk – PSI Spring meeting 2017 (24-26 Apr), Beijing - China
Representation of causality statements
Talk – , European Bioinformatics Institute - United Kingdom
Extraction and representation of causality statements
Talk – pre-COLOSYS meeting (31 May), Paris - France
Integration of Knowledge Management and Logical Modeling
Talk – COLOSYS (1-2 Jun), Paris - France
Extraction and representation of causal statements: Creating a model building resource for Systems Biology
Talk – COMBINE 2017 (9-13 Oct), Milan - Italy
2016
Standardized visualization of differences between model versions
Talk – e:bio Status Seminar 2016 (6 Sep), Munich - Germany
Visualising differences in SBML models using SBGN and BiVeS
Talk – COMBINE 2016 (19-23 Sep), Newcastle upon Tyne - United Kingdom
2015
STON translator: SBGN to Neo4j graph database
Talk – COMBINE 2015 (12-16 Oct), Salt Lake City - United States